jhuguetn/fsl_oxford_asl repository overview

⁠FSL oxford_asl docker image

Docker image including a minimal selection of FSL 6.0.7.7 packages required to run oxford_asl tools from FSL⁠ library.

Find the image in Docker Hub here⁠.

⁠Components

• Ubuntu 20.04 LTS (Focal Fossa)
• conda-forge Miniforge3 23.11.0-0
• FSL 6.0.7.7 packages:
  • fsl-oxford_asl (v4.0.29)
  • fsl-flirt (2111.2)
  • fsl-bet2 (2111.7)
  • fsl-base (2401.0)
  • fsl-utils (2203.4)
  • fsl-misc_scripts (2111.0)
  • fsl-data_standard (2208.0)

⁠Example (registration of ASL image to T1w target space)

 docker run -it --rm -v `pwd`/data:/data jhuguetn/fsl_oxford_asl \
 asl_reg -i /data/pCASL.nii.gz -s /data/T1w.nii -o /data/output

⁠Credits

Jordi Huguet (BarcelonaBeta Brain Research Center⁠)