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staphb/snippy:4.4.5

Machine learning & AI
Data science
Manifest digest

sha256:11d3c429f5297ef0761e30ff566a932b66443bb072bf9e01f420bc13510bcf8e

OS/ARCH

linux/amd64

Compressed size

483.81 MB

Last pushed

almost 7 years by staphb

Type

Image

Manifest digest

sha256:11d3c429f5297ef0761e30ff566a932b66443bb072bf9e01f420bc13510bcf8e

Image Layers

Image Layers

1ADD file ... in / 25.45 MB
2/bin/sh -c [ -z "$(apt-get34.53 KB
3/bin/sh -c set -xe &&845 B
4/bin/sh -c mkdir -p /run/systemd162 B
5CMD ["/bin/bash"]0 B
6LABEL base.image=ubuntu:bionic0 B
7LABEL container.version=1.0.00 B
8LABEL software=Snippy0 B
9LABEL software.version=4.4.50 B
10LABEL description=Rapid haploid variant0 B
11LABEL website=https://github.com/tseemann/snippy0 B
12LABEL license=https://github.com/tseemann/snippy/blob/master/LICENSE0 B
13LABEL maintainer=Curtis Kapsak0 B
14LABEL [email protected]0 B
15/bin/sh -c apt-get update &&210.71 MB
16/bin/sh -c wget https://github.com/lh3/minimap2/releases/download/v2.17/minimap2-2.17_x64-linux.tar.bz2 &&2.19 MB
17/bin/sh -c wget https://github.com/arq5x/bedtools2/releases/download/v2.29.0/bedtools-2.29.0.tar.gz &&54.67 MB
18/bin/sh -c wget https://github.com/atks/vt/archive/0.57721.tar.gz &&30.44 MB
19/bin/sh -c wget https://sourceforge.net/projects/snpeff/files/snpEff_v4_3t_core.zip &&132.65 MB
20/bin/sh -c mkdir seqtk &&188.8 KB
21/bin/sh -c mkdir samclip &&2.22 KB
22/bin/sh -c git clone https://github.com/lh3/wgsim.git101 KB
23/bin/sh -c wget https://github.com/tseemann/snippy/archive/v4.4.5.tar.gz &&27.38 MB
24ENV PATH=/bedtools2/bin:/minimap2-2.17_x64-linux:/vt-0.57721/:/snpEff/scripts:/samclip:/snippy-4.4.5/bin:/snippy-4.4.5/binaries/linux:/wgsim:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
25ENV LC_ALL=C0 B
26WORKDIR /data93 B

Command

ADD file:a48a5dc1b9dbfc632f6cf86fe27b770b63f07a115c98c4465dc184e303a4efa1 in /