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staphb/shovill-se:latest

Manifest digest

sha256:78ea6c6f7c44d5e54b4a761afa5dcec89efae818f0bd8ec47b2c8d8408a442c7

OS/ARCH

linux/amd64

Compressed size

505.51 MB

Last pushed

over 5 years by staphb

Type

Image

Manifest digest

sha256:78ea6c6f7c44d5e54b4a761afa5dcec89efae818f0bd8ec47b2c8d8408a442c7

Image Layers

Image Layers

1ADD file ... in / 44.34 MB
2/bin/sh -c set -xe &&849 B
3/bin/sh -c rm -rf /var/lib/apt/lists/*528 B
4/bin/sh -c mkdir -p /run/systemd169 B
5CMD ["/bin/bash"]0 B
6LABEL base.image=ubuntu:xenial0 B
7LABEL container.version=10 B
8LABEL software=Shovill-SE0 B
9LABEL software.version=1.1.00 B
10LABEL description=faster than SPAdes de0 B
11LABEL website=https://github.com/rpetit3/shovill0 B
12LABEL lisence=https://github.com/tseemann/shovill/blob/master/LICENSE0 B
13LABEL maintainer=Curtis Kapsak0 B
14LABEL [email protected]0 B
15LABEL maintainer=Robert A. Petit III0 B
16LABEL [email protected]0 B
17RUN /bin/sh -c apt-get update354.99 MB
18ENV spadesVer=3.14.10 B
19RUN /bin/sh -c wget https://github.com/ablab/spades/releases/download/v${spadesVer}/SPAdes-${spadesVer}-Linux.tar.gz27.69 MB
20RUN /bin/sh -c mkdir seqtk190.72 KB
21RUN /bin/sh -c mkdir kmc12.08 MB
22RUN /bin/sh -c wget https://github.com/mourisl/Lighter/archive/v1.1.1.tar.gz133.92 KB
23RUN /bin/sh -c mkdir trimmomatic129.95 KB
24RUN /bin/sh -c mkdir bwa1.82 MB
25RUN /bin/sh -c mkdir samtools24.11 MB
26RUN /bin/sh -c mkdir skesa2.42 MB
27RUN /bin/sh -c mkdir megahit6.85 MB
28RUN /bin/sh -c mkdir velvet18.16 MB
29RUN /bin/sh -c mkdir flash110.51 KB
30RUN /bin/sh -c mkdir pilon6.53 MB
31RUN /bin/sh -c mkdir samclip2.38 KB
32RUN /bin/sh -c mkdir shovill5.96 MB
33WORKDIR /data32 B
34ENV PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/SPAdes-3.14.1-Linux/bin:/kmc:/Lighter-1.1.1:/trimmomatic:/bwa/bwa-0.7.17:/skesa:/megahit/megahit_v1.1.4_LINUX_CPUONLY_x86_64-bin:/velvet/velvet-1.2.10:/flash/FLASH-1.2.11:/shovill/shovill-1.1.0se/bin:/pilon:/samclip LC_ALL=C0 B

Command

ADD file:4dd75f16753c9c921fd05b1d0ed5b425d74d87405a76a0b3afcbf9723a50d1ce in /