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staphb/seqsero2:1.1.1

Manifest digest

sha256:3b58a7a44e32d4332d2804bcf4d9710d5859daf4232af679c76c25172d4aba9c

OS/ARCH

linux/amd64

Compressed size

395.81 MB

Last pushed

over 6 years by staphb

Type

Image

Manifest digest

sha256:3b58a7a44e32d4332d2804bcf4d9710d5859daf4232af679c76c25172d4aba9c

Image Layers

Image Layers

1ADD file ... in / 42.2 MB
2/bin/sh -c rm -rf /var/lib/apt/lists/*526 B
3/bin/sh -c set -xe &&853 B
4/bin/sh -c mkdir -p /run/systemd170 B
5CMD ["/bin/bash"]0 B
6LABEL base.image=ubuntu:xenial0 B
7LABEL dockerfile.version=20 B
8LABEL software=SeqSero20 B
9LABEL software.version=1.1.10 B
10LABEL description=Salmonella serotyping from0 B
11LABEL website=https://github.com/denglab/SeqSero20 B
12LABEL license=https://github.com/denglab/SeqSero2/blob/master/LICENSE0 B
13LABEL maintainer1=Jake Garfin0 B
14LABEL [email protected]0 B
15LABEL maintainer2=Curtis Kapsak0 B
16LABEL [email protected]0 B
17LABEL maintainer3=Kelsey Florek0 B
18LABEL [email protected]0 B
19/bin/sh -c apt-get update &&153.24 MB
20ENV samtoolsVer=1.8 SalmIDVer=0.11 SPAdesVer=3.9.00 B
21/bin/sh -c wget http://ftp-trace.ncbi.nlm.nih.gov/sra/sdk/${sratoolkitVer}/sratoolkit.${sratoolkitVer}-ubuntu64.tar.gz &&76.16 MB
22/bin/sh -c wget https://github.com/samtools/samtools/releases/download/${samtoolsVer}/samtools-${samtoolsVer}.tar.bz2 &&20.8 MB
23/bin/sh -c wget https://github.com/hcdenbakker/SalmID/archive/${SalmIDVer}.tar.gz &&2.64 MB
24/bin/sh -c wget https://github.com/ablab/spades/releases/download/v${SPAdesVer}/SPAdes-${SPAdesVer}-Linux.tar.gz &&9.85 MB
25/bin/sh -c wget https://github.com/denglab/SeqSero2/archive/v${SeqSero2Ver}.tar.gz &&90.92 MB
26ENV PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/SPAdes-3.9.0-Linux/bin:/SalmID-0.11:/sratoolkit.2.8.0-ubuntu64/bin LC_ALL=C0 B
27WORKDIR /data0 B

Command

ADD file:4fe14d9555e739e4d006eecb273a2f4a53e6dbe93bd0db26d5f999168b5d4114 in /