staphb/orthofinder:2.17

Machine learning & AI

Data science

Manifest digest

sha256:d92a3c7ee642a80f00574d061752b85d35fe8f11562b9aa564d218f35f79460d

OS/ARCH

linux/amd64

Compressed size

225.37 MB

Last pushed

about 7 years by staphb

Type

Image

Manifest digest

sha256:d92a3c7ee642a80f00574d061752b85d35fe8f11562b9aa564d218f35f79460d

Image Layers

Image Layers

1ADD file ... in / 42.1 MB

2/bin/sh -c rm -rf /var/lib/apt/lists/*529 B

3/bin/sh -c set -xe &&849 B

4/bin/sh -c mkdir -p /run/systemd170 B

5CMD ["/bin/bash"]0 B

6LABEL base.image=ubuntu:xenial0 B

7LABEL version=10 B

8LABEL software=OrthoFinder0 B

9LABEL software.version=2.170 B

10LABEL description=Accurate inference of0 B

11LABEL website=https://github.com/davidemms/OrthoFinder0 B

12LABEL license=https://github.com/davidemms/OrthoFinder/blob/master/License.md0 B

13LABEL maintainer=Abigail Shockey0 B

14LABEL [email protected]0 B

15/bin/sh -c apt-get update &&115.82 MB

16/bin/sh -c wget http://www.microbesonline.org/fasttree/FastTree &&200.43 KB

17/bin/sh -c wget https://github.com/Cibiv/IQ-TREE/releases/download/v1.6.12/iqtree-1.6.12-Linux.tar.gz &&3.52 MB

18/bin/sh -c wget https://github.com/davidemms/OrthoFinder/releases/download/2.3.7/OrthoFinder_glibc-2.17.tar.gz &&25.71 MB

19/bin/sh -c wget https://github.com/stamatak/standard-RAxML/archive/v8.2.12.tar.gz &&10.49 MB

20/bin/sh -c wget https://github.com/amkozlov/raxml-ng/releases/download/0.9.0/raxml-ng_v0.9.0_linux_x86_64.zip &&2.46 MB

21/bin/sh -c wget http://www.drive5.com/muscle/downloads3.8.31/muscle3.8.31_i86linux64.tar.gz &&964.06 KB

22/bin/sh -c wget https://mmseqs.com/latest/mmseqs-linux-avx2.tar.gz &&24.14 MB

23

ENV PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/fasttree:/iqtree-1.6.12-Linux/bin:standard-RAxML-8.2.12:/muscle:/raxml_ng:/mmseqs/bin:/mmseqs/util:/OrthoFinder:/OrthoFinder/bin

0 B

24WORKDIR /data0 B

Command

ADD file:9511990749b593a6f98fcc4d7dfe03df7b2c79be69f7a9ea96b52a6a8065829d in /