staphb/gamma:1.4

Manifest digest

sha256:8c410d79dc913512edbe2972648e1117f1bff10dedb9f97c9b13ff5c6d21df2c

OS/ARCH

linux/amd64

Compressed size

273.59 MB

Last pushed

almost 5 years by staphb

Type

Image

Manifest digest

sha256:8c410d79dc913512edbe2972648e1117f1bff10dedb9f97c9b13ff5c6d21df2c

Image Layers

1ADD file ... in / 25.47 MB

2CMD ["bash"]0 B

3LABEL base.image=ubuntu:bionic0 B

4LABEL dockerfile.version=20 B

5LABEL software=centroid0 B

6LABEL software.version=v1.40 B

7LABEL description=Gene Allele Mutation Microbial0 B

8LABEL website=https://github.com/rastanton/GAMMA/0 B

9LABEL license=Apache 2.00 B

10LABEL maintainer=Rachael St. Jacques0 B

11LABEL [email protected]0 B

12RUN /bin/sh -c apt-get update133.94 MB

13RUN /bin/sh -c pip3 install33.48 MB

14RUN /bin/sh -c wget http://eddylab.org/software/hmmer/hmmer-3.3.tar.gz39.95 MB

15RUN /bin/sh -c mkdir amrfinder1.72 MB

16RUN /bin/sh -c wget http://hgdownload.soe.ucsc.edu/admin/exe/linux.x86_64/blat/blat2.55 MB

17

RUN /bin/sh -c wget http://backup.mediterranee-infection.com/arkotheque/client/ihumed/_depot_arko/articles/691/argannot-nt_doc.fasta

227.51 KB

18RUN /bin/sh -c wget https://github.com/stjacqrm/gb_files/archive/988d9c83d055e026ae62c6398ca6b8a3cde46cc0.zip30.89 KB

19RUN /bin/sh -c wget https://github.com/rastanton/GAMMA/archive/refs/tags/v1.4.tar.gz1.97 MB

20

ENV PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/bin/blat:/amrfinder:/gb_files:/GAMMA:/GAMMA/GAMMA.py:/arg-annot.fasta LC_ALL=C

0 B

21RUN /bin/sh -c cd /amrfinder34.25 MB

22WORKDIR /data32 B

Command

ADD file:0d82cd095966e8ee78b593cb47a352eec842edb7bd9d9468e8a70154522447d1 in /