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staphb/gambit:1.2.0

Index digest

sha256:72b8aed86c7c6a8c57d11197b8466723d090d5ccbc5727222e543ed244c2e62a

OS/ARCH

linux/amd64

Compressed size

914.68 MB

Last pushed

3 months by staphbadmin

Type

Image

Manifest digest

sha256:30fd6713984ebcbeec4b80c19077e50cdbb653ad4f10c22d17657be936dcfbcf

Image Layers

Image Layers

1# debian.sh --arch 'amd64' out/28.4 MB
2ARG CERT_SOURCE=/etc/ssl/certs/ca-certificates.crt0 B
3ARG MAMBA_USER=mambauser0 B
4ARG MAMBA_USER_ID=574390 B
5ARG MAMBA_USER_GID=574390 B
6ENV MAMBA_USER=mambauser0 B
7ENV MAMBA_USER_ID=574390 B
8ENV MAMBA_USER_GID=574390 B
9ENV LANG=C.UTF-8 LC_ALL=C.UTF-80 B
10ENV ENV_NAME=base0 B
11ENV MAMBA_ROOT_PREFIX=/opt/conda0 B
12ENV MAMBA_EXE=/bin/micromamba0 B
13ENV CONDA_OVERRIDE_CUDA=0 B
14COPY /bin/micromamba /bin/micromamba # buildkit7.03 MB
15COPY /etc/ssl/certs/ca-certificates.crt /etc/ssl/certs/ca-certificates.crt # buildkit126.46 KB
16COPY _dockerfile_initialize_user_accounts.sh /usr/local/bin/_dockerfile_initialize_user_accounts.sh # buildkit549 B
17COPY _dockerfile_setup_root_prefix.sh /usr/local/bin/_dockerfile_setup_root_prefix.sh # buildkit283 B
18RUN |4 CERT_SOURCE=/etc/ssl/certs/ca-certificates.crt MAMBA_USER=mambauser MAMBA_USER_ID=574393.7 KB
19USER mambauser0 B
20WORKDIR /tmp32 B
21COPY _apptainer_shell.sh /usr/local/bin/_apptainer_shell.sh # buildkit213 B
22COPY _entrypoint.sh /usr/local/bin/_entrypoint.sh # buildkit700 B
23COPY _activate_current_env.sh /usr/local/bin/_activate_current_env.sh # buildkit655 B
24ENTRYPOINT ["/usr/local/bin/_entrypoint.sh"]0 B
25CMD ["/bin/bash"]0 B
26COPY _dockerfile_shell.sh /usr/local/bin/_dockerfile_shell.sh # buildkit344 B
27SHELL [/usr/local/bin/_dockerfile_shell.sh]0 B
28ARG GAMBIT_DB_BASE_URL=https://storage.googleapis.com/jlumpe-gambit/public/databases/refseq-curated/1.00 B
29ARG GAMBIT_DB_GENOMES_URL=https://storage.googleapis.com/jlumpe-gambit/public/databases/refseq-curated/1.0/gambit-refseq-curated-1.0.gdb0 B
30ARG GAMBIT_DB_SIGNATURES_URL=https://storage.googleapis.com/jlumpe-gambit/public/databases/refseq-curated/1.0/gambit-refseq-curated-1.0.gs0 B
31ARG GAMBIT_SOFTWARE_VERSION=1.2.00 B
32LABEL base.image=mambaorg/micromamba:2.5.00 B
33LABEL dockerfile.version=10 B
34LABEL software=GAMBIT0 B
35LABEL software.version=1.2.00 B
36LABEL description=Rapid genomic-distance comparison for0 B
37LABEL website=https://github.com/jlumpe/gambit0 B
38LABEL license=https://github.com/jlumpe/gambit/blob/master/LICENSE0 B
39LABEL maintainer=Kevin Libuit0 B
40LABEL [email protected]0 B
41LABEL maintainer2=Michelle Scribner0 B
42LABEL [email protected]0 B
43LABEL maintainer3=Jared Lumpe0 B
44LABEL [email protected]0 B
45ENV GAMBIT_DB_PATH=/gambit-db0 B
46ENV LC_ALL=C.UTF-80 B
47ENV PATH=/opt/conda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
48COPY --chown=mambauser:mambauser env.yaml /tmp/env.yaml #333 B
49RUN |4 GAMBIT_DB_BASE_URL=https://storage.googleapis.com/jlumpe-gambit/public/databases/refseq-curated/1.0 GAMBIT_DB_GENOMES_URL=https://storage.googleapis.com/jlumpe-gambit/public/databases/refseq-curated/1.0/gambit-refseq-curated-1.0.gdb GAMBIT_DB_SIGNATURES_URL=https://storage.googleapis.com/jlumpe-gambit/public/databases/refseq-curated/1.0/gambit-refseq-curated-1.0.gs212.8 MB
50ARG MAMBA_DOCKERFILE_ACTIVATE=10 B
51COPY /install /opt/conda # buildkit912.08 KB
52USER root0 B
53RUN |5 GAMBIT_DB_BASE_URL=https://storage.googleapis.com/jlumpe-gambit/public/databases/refseq-curated/1.0 GAMBIT_DB_GENOMES_URL=https://storage.googleapis.com/jlumpe-gambit/public/databases/refseq-curated/1.0/gambit-refseq-curated-1.0.gdb GAMBIT_DB_SIGNATURES_URL=https://storage.googleapis.com/jlumpe-gambit/public/databases/refseq-curated/1.0/gambit-refseq-curated-1.0.gs531.76 KB
54USER mambauser0 B
55ADD --chown=mambauser:mambauser https://storage.googleapis.com/jlumpe-gambit/public/databases/refseq-curated/1.0/gambit-refseq-curated-1.0.gdb /gambit-db/ #3.9 MB
56ADD --chown=mambauser:mambauser https://storage.googleapis.com/jlumpe-gambit/public/databases/refseq-curated/1.0/gambit-refseq-curated-1.0.gs /gambit-db/ #661.01 MB
57WORKDIR /data32 B
58CMD ["gambit" "--help"]0 B

Command

# debian.sh --arch 'amd64' out/ 'trixie' '@1773619200'