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staphb/gambit:1.0.0

Manifest digest

sha256:760531a9215f69643ceaa4676ebbebce8fe503ed9247a8dab06face6908b841b

OS/ARCH

linux/amd64

Compressed size

995.49 MB

Last pushed

almost 4 years by staphbadmin

Type

Image

Manifest digest

sha256:760531a9215f69643ceaa4676ebbebce8fe503ed9247a8dab06face6908b841b

Image Layers

Image Layers

1ADD file ... in / 29.96 MB
2CMD ["bash"]0 B
3ENV LANG=C.UTF-8 LC_ALL=C.UTF-80 B
4ENV ENV_NAME=base0 B
5ENV MAMBA_ROOT_PREFIX=/opt/conda0 B
6ENV MAMBA_EXE=/bin/micromamba0 B
7COPY /etc/ssl/certs/ca-certificates.crt /etc/ssl/certs/ca-certificates.crt # buildkit112.53 KB
8COPY /tmp/bin/micromamba /bin/micromamba # buildkit6.38 MB
9ARG MAMBA_USER=mambauser0 B
10ARG MAMBA_USER_ID=10000 B
11ARG MAMBA_USER_GID=10000 B
12ENV MAMBA_USER=mambauser0 B
13COPY _dockerfile_initialize_user_accounts.sh /usr/local/bin/_dockerfile_initialize_user_accounts.sh # buildkit439 B
14COPY _dockerfile_setup_root_prefix.sh /usr/local/bin/_dockerfile_setup_root_prefix.sh # buildkit288 B
15RUN |3 MAMBA_USER=mambauser MAMBA_USER_ID=1000 MAMBA_USER_GID=10004.49 KB
16USER mambauser0 B
17WORKDIR /tmp32 B
18COPY _entrypoint.sh /usr/local/bin/_entrypoint.sh # buildkit689 B
19COPY _activate_current_env.sh /usr/local/bin/_activate_current_env.sh # buildkit646 B
20ENTRYPOINT ["/usr/local/bin/_entrypoint.sh"]0 B
21CMD ["/bin/bash"]0 B
22COPY _dockerfile_shell.sh /usr/local/bin/_dockerfile_shell.sh # buildkit350 B
23SHELL [/usr/local/bin/_dockerfile_shell.sh]0 B
24ARG GAMBIT_SOFTWARE_VERSION=1.0.00 B
25ARG GAMBIT_GIT_TAG=v1.0.00 B
26ARG GAMBIT_SRC_URL=https://github.com/jlumpe/gambit/archive/refs/tags/v1.0.0.tar.gz0 B
27LABEL base.image=mambaorg/micromamba:0.27.00 B
28LABEL dockerfile.version=10 B
29LABEL software=GAMBIT0 B
30LABEL software.version=1.0.00 B
31LABEL description=Rapid genomic-distance comparison for0 B
32LABEL website=https://github.com/jlumpe/gambit0 B
33LABEL license=https://github.com/jlumpe/gambit/blob/master/LICENSE0 B
34LABEL maintainer1=Kevin Libuit0 B
35LABEL [email protected]0 B
36LABEL maintainer2=Michelle Scribner0 B
37LABEL [email protected]0 B
38LABEL maintainer3=Jared Lumpe0 B
39LABEL [email protected]0 B
40ENV GAMBIT_DB_PATH=/gambit-db0 B
41ENV LC_ALL=C.UTF-80 B
42COPY env.yaml /tmp/env.yaml # buildkit368 B
43RUN |3 GAMBIT_SOFTWARE_VERSION=1.0.0 GAMBIT_GIT_TAG=v1.0.0 GAMBIT_SRC_URL=https://github.com/jlumpe/gambit/archive/refs/tags/v1.0.0.tar.gz292.5 MB
44ARG MAMBA_DOCKERFILE_ACTIVATE=1 # Subsequent RUN0 B
45RUN |10 GAMBIT_SOFTWARE_VERSION=1.0.0 GAMBIT_GIT_TAG=v1.0.0 GAMBIT_SRC_URL=https://github.com/jlumpe/gambit/archive/refs/tags/v1.0.0.tar.gz1.61 MB
46USER root0 B
47RUN |10 GAMBIT_SOFTWARE_VERSION=1.0.0 GAMBIT_GIT_TAG=v1.0.0 GAMBIT_SRC_URL=https://github.com/jlumpe/gambit/archive/refs/tags/v1.0.0.tar.gz119 B
48USER mambauser0 B
49WORKDIR /data32 B
50ENV PATH=/opt/conda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
51ARG GAMBIT_DB_BASE_URL=https://storage.googleapis.com/jlumpe-gambit/public/databases/refseq-curated/1.00 B
52ARG GAMBIT_DB_GENOMES_URL=https://storage.googleapis.com/jlumpe-gambit/public/databases/refseq-curated/1.0/gambit-refseq-curated-1.0.gdb0 B
53ARG GAMBIT_DB_SIGNATURES_URL=https://storage.googleapis.com/jlumpe-gambit/public/databases/refseq-curated/1.0/gambit-refseq-curated-1.0.gs0 B
54ADD https://storage.googleapis.com/jlumpe-gambit/public/databases/refseq-curated/1.0/gambit-refseq-curated-1.0.gdb /gambit-db/ # buildkit3.9 MB
55ADD https://storage.googleapis.com/jlumpe-gambit/public/databases/refseq-curated/1.0/gambit-refseq-curated-1.0.gs /gambit-db/ # buildkit661.01 MB

Command

ADD file:8644a8156a07a656a35c41e2b2a458befb660309f8592e3efd5b43d46156cec2 in /