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staphb/cfsan-snp-pipeline:2.2.1

Machine learning & AI
Data science
Manifest digest

sha256:1a8d6097dc5872a1c28c1499be2a49ef41dec6b957bfc85c19ec1857ab0aeaed

OS/ARCH

linux/amd64

Compressed size

723.69 MB

Last pushed

over 3 years by staphbadmin

Type

Image

Manifest digest

sha256:1a8d6097dc5872a1c28c1499be2a49ef41dec6b957bfc85c19ec1857ab0aeaed

Image Layers

Image Layers

1ADD file ... in / 44.34 MB
2/bin/sh -c set -xe &&857 B
3/bin/sh -c rm -rf /var/lib/apt/lists/*528 B
4/bin/sh -c mkdir -p /run/systemd170 B
5CMD ["/bin/bash"]0 B
6LABEL base.image=ubuntu:xenial0 B
7LABEL dockerfile.version=10 B
8LABEL software=cfsan_snp_pipeline0 B
9LABEL software.version=2.2.10 B
10LABEL description=A pipeline for the0 B
11LABEL website=https://github.com/CFSAN-Biostatistics/snp-pipeline0 B
12LABEL license=https://github.com/CFSAN-Biostatistics/snp-pipeline/blob/master/LICENSE.txt0 B
13LABEL original.maintainer=Justin Payne0 B
14LABEL [email protected]0 B
15LABEL maintainer=Curtis Kapsak0 B
16LABEL [email protected]0 B
17WORKDIR /tmp/32 B
18RUN /bin/sh -c apt-get update239.41 MB
19ARG SNP_PIPELINE_VER0 B
20ENV SNP_PIPELINE_VER=2.2.10 B
21ARG BCFTOOLS_VER0 B
22ENV BCFTOOLS_VER=1.80 B
23ARG BOWTIE2_VER0 B
24ENV BOWTIE2_VER=2.3.4.10 B
25ARG HTSLIB_VER0 B
26ENV HTSLIB_VER=1.3.20 B
27ARG GATK_VER0 B
28ENV GATK_VER=3.4-46-gbc026250 B
29ARG PICARD_VER0 B
30ENV PICARD_VER=2.18.40 B
31ARG SAMTOOLS_VER0 B
32ENV SAMTOOLS_VER=1.80 B
33ARG SRATOOLKIT_VER0 B
34ENV SRATOOLKIT_VER=2.8.10 B
35ARG VARSCAN_VER0 B
36ENV VARSCAN_VER=2.3.90 B
37ARG NUMPY_VER0 B
38ENV NUMPY_VER=1.16.60 B
39ARG BIOPYTHON_VER0 B
40ENV BIOPYTHON_VER=1.680 B
41RUN |11 SNP_PIPELINE_VER=2.2.1 BCFTOOLS_VER=1.8 BOWTIE2_VER=2.3.4.17.06 MB
42RUN |11 SNP_PIPELINE_VER=2.2.1 BCFTOOLS_VER=1.8 BOWTIE2_VER=2.3.4.130.15 MB
43RUN |11 SNP_PIPELINE_VER=2.2.1 BCFTOOLS_VER=1.8 BOWTIE2_VER=2.3.4.116.65 MB
44RUN |11 SNP_PIPELINE_VER=2.2.1 BCFTOOLS_VER=1.8 BOWTIE2_VER=2.3.4.119.95 MB
45RUN |11 SNP_PIPELINE_VER=2.2.1 BCFTOOLS_VER=1.8 BOWTIE2_VER=2.3.4.114.57 MB
46RUN |11 SNP_PIPELINE_VER=2.2.1 BCFTOOLS_VER=1.8 BOWTIE2_VER=2.3.4.1215.63 KB
47RUN |11 SNP_PIPELINE_VER=2.2.1 BCFTOOLS_VER=1.8 BOWTIE2_VER=2.3.4.1150.94 MB
48RUN |11 SNP_PIPELINE_VER=2.2.1 BCFTOOLS_VER=1.8 BOWTIE2_VER=2.3.4.133.62 MB
49RUN |11 SNP_PIPELINE_VER=2.2.1 BCFTOOLS_VER=1.8 BOWTIE2_VER=2.3.4.123.4 MB
50RUN |11 SNP_PIPELINE_VER=2.2.1 BCFTOOLS_VER=1.8 BOWTIE2_VER=2.3.4.1143.38 MB
51ENV PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/tmp/samtools-1.8/bin:/tmp/bcftools-1.8/bin:/tmp/bowtie2-2.3.4.1/bin0 B
52ENV CLASSPATH=/usr/bin/VarScan.jar:/usr/bin/picard.jar:/usr/bin/GenomeAnalysisTK.jar0 B
53ENV NUMCORES=10 B
54WORKDIR /data100 B

Command

ADD file:11b425d4c08e81a3e0cb2e0345d27cd5fc844dd83f1096af4cc05f635824ff5d in /