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pwighton/pl-fs6-recon-all:latest

Manifest digest

sha256:9bc8fa64ef58fa264142a336a554ea804504ff74d4f7d9eb70384d2f8d229cad

OS/ARCH

linux/amd64

Compressed size

2.54 GB

Last pushed

over 8 years by pwighton

Type

Image

Manifest digest

sha256:9bc8fa64ef58fa264142a336a554ea804504ff74d4f7d9eb70384d2f8d229cad

Image Layers

Image Layers

1ADD file ... in / 58.82 MB
2CMD ["/bin/bash"]0 B
3/bin/sh -c yum -y install38.22 MB
4/bin/sh -c wget -qO- https://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/6.0.0/freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0.tar.gz2.41 GB
5ENV FREESURFER_HOME=/freesurfer0 B
6MAINTAINER fnndsc "[email protected]"0 B
7ENV FS_OVERRIDE=00 B
8ENV OS=Linux0 B
9ENV FIX_VERTEX_AREA=0 B
10ENV FSF_OUTPUT_FORMAT=nii.gz0 B
11ENV SUBJECTS_DIR=/subjects0 B
12VOLUME [/subjects]0 B
13ENV MNI_DIR=/freesurfer/mni0 B
14ENV LOCAL_DIR=/freesurfer/local0 B
15ENV FSFAST_HOME=/freesurfer/fsfast0 B
16ENV MINC_BIN_DIR=/freesurfer/mni/bin0 B
17ENV MINC_LIB_DIR=/freesurfer/mni/lib0 B
18ENV MNI_DATAPATH=/freesurfer/mni/data0 B
19ENV FMRI_ANALYSIS_DIR=/freesurfer/fsfast0 B
20ENV PERL5LIB=/freesurfer/mni/lib/perl5/5.8.50 B
21ENV MNI_PERL5LIB=/freesurfer/mni/lib/perl5/5.8.50 B
22ENV PATH=/freesurfer/bin:/freesurfer/fsfast/bin:/freesurfer/tktools:/freesurfer/mni/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
23/bin/sh -c yum -y update26.03 MB
24/bin/sh -c curl -s https://bootstrap.pypa.io/get-pip.py5.29 MB
25/bin/sh -c cd /usr/local/bin &&167 B
26ENV APPROOT=/usr/src/fs6_recon_all VERSION=0.10 B
27ENV PATH=/usr/src/fs6_recon_all:/freesurfer/bin:/freesurfer/fsfast/bin:/freesurfer/tktools:/freesurfer/mni/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
28WORKDIR /usr/src/fs6_recon_all139 B
29COPY dir:22fb295e26b9fdd596433578b17557ed3a347d49c6daebf6acfd9280a516eb81 in /usr/src/fs6_recon_all 1.58 KB
30COPY file:78127877b1e23d0edbf7b819e66a34f530d202fbf448b40168644b188e1b93ee in /usr/src/fs6_recon_all 201 B
31/bin/sh -c pip3 install -r20.79 KB
32CMD ["fs6_recon_all.py" "--json"]0 B

Command

ADD file:492f26279427ea21bc9c2b3cb75604010242e8c5e082b7dddf460fbbb6f9b04b in /