Sign inSign up

ftricomi/test:braker2_prothint2

Manifest digest

sha256:d7e382faa9f15e359e1fc7fdb23cac5b1c238e9c36a1c4e8efdd8775454a1aab

OS/ARCH

linux/amd64

Compressed size

1.13 GB

Last pushed

over 5 years by ftricomi

Type

Image

Manifest digest

sha256:d7e382faa9f15e359e1fc7fdb23cac5b1c238e9c36a1c4e8efdd8775454a1aab

Image Layers

Image Layers

1ADD file ... in / 27.24 MB
2/bin/sh -c set -xe &&847 B
3/bin/sh -c [ -z "$(apt-get0 B
4/bin/sh -c mkdir -p /run/systemd162 B
5CMD ["/bin/bash"]0 B
6LABEL [email protected]0 B
7ENV DEBIAN_FRONTEND=noninteractive TZ=Europe/London0 B
8/bin/sh -c apt-get update18.83 MB
9/bin/sh -c apt-get install -y214.14 MB
10COPY file:7c9f0570ec8e4b785e117dc34c7c03ec8df24115052c1ba2967117e2896ff381 in / 23.92 MB
11/bin/sh -c tar -xf gmes_linux_64.tar23.91 MB
12/bin/sh -c wget https://github.com/Gaius-Augustus/Augustus/archive/v3.4.0.tar.gz202.16 MB
13/bin/sh -c tar -xzf v3.4.0.tar.gz207.51 MB
14/bin/sh -c apt-get install -y155.9 MB
15/bin/sh -c apt-get install -y8.23 MB
16/bin/sh -c apt-get install -y787.05 KB
17/bin/sh -c apt-get install -y23.87 MB
18/bin/sh -c apt-get install -y2.57 MB
19/bin/sh -c apt-get install -y7.31 MB
20/bin/sh -c cd /Augustus-3.4.0/ &&54.48 MB
21/bin/sh -c apt-get install bamtools824.96 KB
22/bin/sh -c wget https://github.com/bbuchfink/diamond/releases/download/v2.0.6/diamond-linux64.tar.gz4.56 MB
23/bin/sh -c tar -xzf diamond-linux64.tar.gz4.64 MB
24/bin/sh -c wget https://github.com/gatech-genemark/ProtHint/releases/download/v2.4.0/ProtHint-2.4.0.tar.gz23.63 MB
25/bin/sh -c tar -xzf ProtHint-2.4.0.tar.gz23.48 MB
26/bin/sh -c wget https://genomethreader.org/distributions/gth-1.7.3-Linux_x86_64-64bit.tar.gz9.34 MB
27/bin/sh -c tar -zxf gth-1.7.3-Linux_x86_64-64bit.tar.gz9.61 MB
28/bin/sh -c mkdir /ProtHint-2.4.0/bin/gth191 B
29/bin/sh -c cp /gth-1.7.3-Linux_x86_64-64bit/bin/gth /ProtHint-2.4.0/bin/gth/1.47 MB
30/bin/sh -c wget https://github.com/Gaius-Augustus/BRAKER/archive/v2.1.5.tar.gz23.7 MB
31/bin/sh -c tar -xzf v2.1.5.tar.gz23.48 MB
32/bin/sh -c cpanm File::Spec::Functions Hash::Merge5.24 MB
33/bin/sh -c mkdir /data127 B
34VOLUME [/data]0 B
35WORKDIR /data0 B
36COPY file:b3550e2ef1762b8b4f6fca2388ce535b12d0f0a69b7e3bb5f49e6f7f2f7f5ac4 in / 186 B
37/bin/sh -c gunzip /gm_key_64.gz196 B
38/bin/sh -c cp /gm_key_64 /.gm_key156 B
39/bin/sh -c cp /.gm_key /data/.gm_key0 B
40/bin/sh -c cp /.gm_key ~/.gm_key187 B
41/bin/sh -c echo ~/0 B
42ENV HOME=/home/0 B
43/bin/sh -c cp /.gm_key /$HOME/.gm_key189 B
44/bin/sh -c chmod a+rwx -R30.31 MB
45/bin/sh -c cp -r /Augustus-3.4.0/auxprogs/utrrnaseq21.74 MB
46ENV PATH=/BRAKER-2.1.5/scripts:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
47ENV PATH=/Augustus-3.4.0/bin:/BRAKER-2.1.5/scripts:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
48ENV PATH=/Augustus-3.4.0/config:/Augustus-3.4.0/bin:/BRAKER-2.1.5/scripts:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
49ENV PATH=/Augustus-3.4.0/scripts:/Augustus-3.4.0/config:/Augustus-3.4.0/bin:/BRAKER-2.1.5/scripts:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
50ENV PATH=/gmes_linux_64/:/Augustus-3.4.0/scripts:/Augustus-3.4.0/config:/Augustus-3.4.0/bin:/BRAKER-2.1.5/scripts:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
51ENV PATH=/usr/bin:/gmes_linux_64/:/Augustus-3.4.0/scripts:/Augustus-3.4.0/config:/Augustus-3.4.0/bin:/BRAKER-2.1.5/scripts:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
52ENV PATH=/ProtHint-2.4.0/bin:/usr/bin:/gmes_linux_64/:/Augustus-3.4.0/scripts:/Augustus-3.4.0/config:/Augustus-3.4.0/bin:/BRAKER-2.1.5/scripts:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
53ENV PATH=/Augustus-3.4.0/bin/utrrnaseq:/ProtHint-2.4.0/bin:/usr/bin:/gmes_linux_64/:/Augustus-3.4.0/scripts:/Augustus-3.4.0/config:/Augustus-3.4.0/bin:/BRAKER-2.1.5/scripts:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
54ENV AUGUSTUS_CONFIG_PATH=/Augustus-3.4.0/config0 B
55ENV AUGUSTUS_SCRIPTS_PATH=/Augustus-3.4.0/scripts0 B
56ENV AUGUSTUS_BIN_PATH=/Augustus-3.4.0/bin/0 B
57ENV GENEMARK_PATH=/gmes_linux_64/0 B
58ENV BAMTOOLS_PATH=/usr/bin/0 B
59ENV DIAMOND_PATH=/0 B
60ENV PROTHINT_PATH=/ProtHint-2.4.0/bin0 B
61ENV ALIGNMENT_TOOL_PATH=/ProtHint-2.4.0/bin0 B
62/bin/sh -c echo $HOME0 B
63/bin/sh -c echo $PATH0 B
64/bin/sh -c echo $WORKDIR0 B

Command

ADD file:4f15c4475fbafb3fe335e415e3ea1ac416c34af911fcdfe273c5759438aa8eb4 in /