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ftricomi/test:braker2

Manifest digest

sha256:44ac3ad4399a7b3f8de4cd9694d4c3cff78df1f85313445c18e32d90236a6c83

OS/ARCH

linux/amd64

Compressed size

1.04 GB

Last pushed

over 5 years by ftricomi

Type

Image

Manifest digest

sha256:44ac3ad4399a7b3f8de4cd9694d4c3cff78df1f85313445c18e32d90236a6c83

Image Layers

Image Layers

1ADD file ... in / 27.24 MB
2/bin/sh -c set -xe &&847 B
3/bin/sh -c [ -z "$(apt-get0 B
4/bin/sh -c mkdir -p /run/systemd162 B
5CMD ["/bin/bash"]0 B
6LABEL [email protected]0 B
7ENV DEBIAN_FRONTEND=noninteractive TZ=Europe/London0 B
8/bin/sh -c apt-get update18.83 MB
9/bin/sh -c apt-get install -y214.14 MB
10COPY file:7c9f0570ec8e4b785e117dc34c7c03ec8df24115052c1ba2967117e2896ff381 in / 23.92 MB
11/bin/sh -c tar -xf gmes_linux_64.tar23.91 MB
12/bin/sh -c wget https://github.com/Gaius-Augustus/Augustus/archive/v3.4.0.tar.gz202.16 MB
13/bin/sh -c tar -xzf v3.4.0.tar.gz207.51 MB
14/bin/sh -c apt-get install -y155.9 MB
15/bin/sh -c apt-get install -y8.23 MB
16/bin/sh -c apt-get install -y787.05 KB
17/bin/sh -c apt-get install -y23.87 MB
18/bin/sh -c apt-get install -y2.57 MB
19/bin/sh -c apt-get install -y7.31 MB
20/bin/sh -c cd /Augustus-3.4.0/ &&54.48 MB
21/bin/sh -c apt-get install bamtools824.96 KB
22/bin/sh -c wget https://github.com/bbuchfink/diamond/releases/download/v2.0.6/diamond-linux64.tar.gz4.56 MB
23/bin/sh -c tar -xzf diamond-linux64.tar.gz4.64 MB
24/bin/sh -c wget https://github.com/Gaius-Augustus/BRAKER/archive/v2.1.5.tar.gz23.7 MB
25/bin/sh -c tar -xzf v2.1.5.tar.gz23.48 MB
26/bin/sh -c cpanm File::Spec::Functions Hash::Merge5.08 MB
27/bin/sh -c mkdir /data127 B
28VOLUME [/data]0 B
29WORKDIR /data0 B
30COPY file:b3550e2ef1762b8b4f6fca2388ce535b12d0f0a69b7e3bb5f49e6f7f2f7f5ac4 in / 186 B
31/bin/sh -c gunzip /gm_key_64.gz197 B
32/bin/sh -c cp /gm_key_64 /.gm_key157 B
33/bin/sh -c cp /.gm_key /data/.gm_key0 B
34/bin/sh -c cp /.gm_key ~/.gm_key188 B
35/bin/sh -c echo ~/0 B
36ENV HOME=/home/0 B
37/bin/sh -c cp /.gm_key /$HOME/.gm_key187 B
38/bin/sh -c chmod a+rwx -R30.31 MB
39ENV PATH=/BRAKER-2.1.5/scripts:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
40ENV PATH=/Augustus-3.4.0/bin:/BRAKER-2.1.5/scripts:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
41ENV PATH=/Augustus-3.4.0/config:/Augustus-3.4.0/bin:/BRAKER-2.1.5/scripts:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
42ENV PATH=/Augustus-3.4.0/scripts:/Augustus-3.4.0/config:/Augustus-3.4.0/bin:/BRAKER-2.1.5/scripts:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
43ENV PATH=/gmes_linux_64/:/Augustus-3.4.0/scripts:/Augustus-3.4.0/config:/Augustus-3.4.0/bin:/BRAKER-2.1.5/scripts:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
44ENV PATH=/usr/bin:/gmes_linux_64/:/Augustus-3.4.0/scripts:/Augustus-3.4.0/config:/Augustus-3.4.0/bin:/BRAKER-2.1.5/scripts:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
45ENV AUGUSTUS_CONFIG_PATH=/Augustus-3.4.0/config0 B
46ENV AUGUSTUS_SCRIPTS_PATH=/Augustus-3.4.0/scripts0 B
47ENV AUGUSTUS_BIN_PATH=/Augustus-3.4.0/bin/0 B
48ENV GENEMARK_PATH=/gmes_linux_64/0 B
49ENV BAMTOOLS_PATH=/usr/bin/0 B
50ENV DIAMOND_PATH=/0 B
51/bin/sh -c echo $HOME0 B
52/bin/sh -c echo $PATH0 B
53/bin/sh -c echo $WORKDIR0 B

Command

ADD file:4f15c4475fbafb3fe335e415e3ea1ac416c34af911fcdfe273c5759438aa8eb4 in /